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Bra003045 protein (Brassica rapa) - STRING interaction network
"Bra003045" - AT5G53580 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003045AT5G53580 (E=6e-198) | aldo/keto reductase family protein (361 aa)    
Predicted Functional Partners:
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
   
 
  0.972
Bra028155
AT5G37850 (E=3e-159) SOS4, ATSOS4 | SOS4 (SALT OVERLY SENSITIVE 4); kinase/ pyridoxal kinase (309 aa)
         
  0.953
Bra003323
AT2G46450 (E=5e-181) ATCNGC12, CNGC12 | ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel (666 aa)
     
  0.646
Bra040787
AT1G01340 (E=2e-019) ATCNGC10, CNGC10, ACBK1 | ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel (165 aa)
       
  0.637
Bra040606
AT3G02850 (E=0.0) SKOR | SKOR; cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel (829 aa)
       
  0.637
Bra039221
AT2G23980 (E=0.0) ATCNGC6, CNGC6 | ATCNGC6; calmodulin binding (737 aa)
       
  0.637
Bra037049
AT4G32650 (E=4e-290) ATKC1, KAT3 | ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1); cyclic nucleotide binding / inward rectifier potassium channel (645 aa)
       
  0.637
Bra036395
AT5G37500 (E=0.0) GORK | GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL); cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel (817 aa)
       
  0.637
Bra034281
AT2G46450 (E=4e-254) ATCNGC12, CNGC12 | ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel (647 aa)
       
  0.637
Bra032132
AT2G23980 (E=0.0) ATCNGC6, CNGC6 | ATCNGC6; calmodulin binding (746 aa)
       
  0.637
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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