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Bra003047 protein (Brassica rapa) - STRING interaction network
"Bra003047" - AT5G53550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003047AT5G53550 (E=0.0) YSL3, ATYSL3 | YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter (805 aa)    
Predicted Functional Partners:
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
     
0.943
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
     
0.942
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
     
0.942
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
       
 
  0.782
Bra023636
AT5G17770 (E=2e-078) ATCBR, CBR1 | ATCBR (ARABIDOPSIS THALIANA NADH-CYTOCHROME B5 REDUCTASE 1); cytochrome-b5 reductase (251 aa)
     
  0.774
Bra006538
AT5G20080 (E=2e-180) | NADH-cytochrome b5 reductase, putative (328 aa)
     
  0.774
Bra006419
AT5G17770 (E=9e-146) ATCBR, CBR1 | ATCBR (ARABIDOPSIS THALIANA NADH-CYTOCHROME B5 REDUCTASE 1); cytochrome-b5 reductase (282 aa)
     
  0.774
Bra002104
AT5G17770 (E=2e-145) ATCBR, CBR1 | ATCBR (ARABIDOPSIS THALIANA NADH-CYTOCHROME B5 REDUCTASE 1); cytochrome-b5 reductase (281 aa)
     
  0.774
Bra032439
AT1G06080 (E=4e-176) ADS1 | ADS1 (DELTA 9 DESATURASE 1); oxidoreductase (303 aa)
     
  0.766
Bra032438
AT1G06090 (E=9e-163) | fatty acid desaturase family protein (300 aa)
     
  0.766
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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