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Bra003050 protein (Brassica rapa) - STRING interaction network
"Bra003050" - AT5G53510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003050AT5G53510 (E=0.0) ATOPT9, OPT9 | ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9); oligopeptide transporter (730 aa)    
Predicted Functional Partners:
Bra028393
AT5G37830 (E=0.0) OXP1 | OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase (1265 aa)
           
  0.495
Bra002251
AT5G19640 (E=1e-269) | proton-dependent oligopeptide transport (POT) family protein (607 aa)
     
 
  0.450
Bra020609
AT5G28470 (E=5e-252) | transporter (572 aa)
     
 
  0.441
Bra009996
AT5G28470 (E=4e-272) | transporter (569 aa)
     
 
  0.441
Bra023267
AT1G32450 (E=1e-312) NRT1.5 | NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter (610 aa)
     
 
  0.440
Bra010165
AT1G32450 (E=0.0) NRT1.5 | NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter (604 aa)
     
 
  0.440
Bra039125
AT3G01350 (E=5e-248) | proton-dependent oligopeptide transport (POT) family protein (549 aa)
     
 
  0.437
Bra038763
AT4G21680 (E=2e-301) | proton-dependent oligopeptide transport (POT) family protein (583 aa)
     
 
  0.437
Bra038367
AT1G68570 (E=2e-312) | proton-dependent oligopeptide transport (POT) family protein (604 aa)
     
 
  0.437
Bra038366
AT1G68570 (E=7e-234) | proton-dependent oligopeptide transport (POT) family protein (464 aa)
     
 
  0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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