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Bra003052 protein (Brassica rapa) - STRING interaction network
"Bra003052" - AT5G53500 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003052AT5G53500 (E=3e-288) | WD-40 repeat family protein (642 aa)    
Predicted Functional Partners:
Bra003046
AT5G53570 (E=2e-218) | RabGAP/TBC domain-containing protein (545 aa)
     
   
  0.681
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
       
      0.613
Bra009946
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
       
      0.612
Bra009946.1-P
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
       
      0.612
Bra039144
AT3G01120 (E=6e-221) MTO1, CGS, ATCYS1, CGS1 | MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (530 aa)
       
      0.524
Bra027715
AT1G64660 (E=2e-207) ATMGL | ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE); catalytic/ methionine gamma-lyase (405 aa)
       
      0.524
Bra014648
AT3G57050 (E=9e-221) CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase (465 aa)
       
      0.524
Bra008703
AT3G01120 (E=5e-156) MTO1, CGS, ATCYS1, CGS1 | MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (404 aa)
       
      0.524
Bra007296
AT3G57050 (E=7e-195) CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase (403 aa)
       
      0.524
Bra001020
AT3G01120 (E=4e-223) MTO1, CGS, ATCYS1, CGS1 | MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (545 aa)
       
      0.524
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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