STRINGSTRING
Bra003053 protein (Brassica rapa) - STRING interaction network
"Bra003053" - AT5G53490 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
Bra003053AT5G53490 (E=6e-099) | thylakoid lumenal 17.4 kDa protein, chloroplast (241 aa)    
Predicted Functional Partners:
Bra036258
AT4G02530 (E=4e-074) | chloroplast thylakoid lumen protein (219 aa)
     
   
  0.668
Bra011635
AT4G35760 (E=4e-144) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vitamin K epoxide reductase (InterPro-IPR012932), Thioredoxin-like fold (InterPro-IPR012336); Has 447 Blast hits to 447 proteins in 86 species- Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink). (358 aa)
     
      0.624
Bra028837
AT5G52970 (E=5e-087) | thylakoid lumen 15.0 kDa protein (224 aa)
   
        0.581
Bra039115
AT3G01480 (E=7e-188) CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase (428 aa)
   
   
  0.518
Bra010517
AT4G35760 (E=3e-041) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vitamin K epoxide reductase (InterPro-IPR012932), Thioredoxin-like fold (InterPro-IPR012336); Has 447 Blast hits to 447 proteins in 86 species- Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink). (125 aa)
     
      0.515
Bra014681
AT3G56650 (E=2e-129) | thylakoid lumenal 20 kDa protein (257 aa)
     
   
  0.495
Bra020978
AT4G19100 (E=9e-074) | unknown protein (200 aa)
   
        0.480
Bra007348
AT3G57680 (E=1e-227) | peptidase S41 family protein (495 aa)
           
  0.474
Bra027180
AT3G16250 (E=6e-092) NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (204 aa)
   
        0.469
Bra021172
AT3G16250 (E=2e-104) NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (204 aa)
   
        0.469
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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