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Bra003055 protein (Brassica rapa) - STRING interaction network
"Bra003055" - AT5G53450 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003055AT5G53450 (E=0.0) ORG1 | ORG1 (OBP3-responsive gene 1); ATP binding / kinase/ protein kinase (666 aa)    
Predicted Functional Partners:
Bra034614
AT2G27960 (E=4e-040) CKS1, CKS1AT | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding ; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (88 aa)
     
  0.980
Bra034380
AT2G27970 (E=2e-037) CKS2 | CKS2 (CDK-subunit 2); cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator ; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (81 aa)
     
  0.980
Bra036544
AT1G65550 (E=2e-209) | xanthine/uracil permease family protein (987 aa)
     
  0.978
Bra018366
AT2G29680 (E=6e-040) CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL 6) (133 aa)
     
  0.977
Bra015569
AT1G07270 (E=2e-202) | cell division control protein CDC6b, putative (CDC6b) (494 aa)
     
  0.977
Bra000473
AT2G29690 (E=5e-290) ASA2, ATHANSYNAB | ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase (1131 aa)
     
  0.977
Bra032577
AT1G02970 (E=4e-218) WEE1, ATWEE1 | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase (455 aa)
     
  0.976
Bra030517
AT1G02970 (E=6e-151) WEE1, ATWEE1 | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase (933 aa)
     
  0.976
Bra014153
AT1G69680 (E=9e-025) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro-IPR016124), Ran-interacting Mog1 protein (InterPro-IPR007681), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro-IPR016123); Has 202 Blast hits to 202 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 83; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source- NCBI BLink). (147 aa)
     
  0.976
Bra037265
AT2G17620 (E=8e-144) CYCB2;1 | CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator (409 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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