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Bra003056 protein (Brassica rapa) - STRING interaction network
"Bra003056" - AT5G53430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003056AT5G53430 (E=9e-200) SDG29, SET29, ATX5 | SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding (723 aa)    
Predicted Functional Partners:
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
     
  0.970
Bra023908
AT3G21060 (E=3e-262) | transducin family protein / WD-40 repeat family protein (547 aa)
     
  0.969
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.968
Bra031808
AT5G66240 (E=4e-169) | transducin family protein / WD-40 repeat family protein (335 aa)
       
 
  0.948
Bra023473
AT5G14530 (E=6e-182) | transducin family protein / WD-40 repeat family protein (332 aa)
       
 
  0.948
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
     
0.942
Bra027514
AT5G43920 (E=1e-254) | transducin family protein / WD-40 repeat family protein (1112 aa)
     
  0.939
Bra037051
AT4G32551 (E=0.0) LUG, RON2 | LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (913 aa)
     
  0.939
Bra034178
AT4G03020 (E=2e-257) | transducin family protein / WD-40 repeat family protein (510 aa)
     
  0.939
Bra026751
AT1G15750 (E=0.0) WSIP1, TPL | TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (1130 aa)
     
  0.939
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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