STRINGSTRING
Bra003057 protein (Brassica rapa) - STRING interaction network
"Bra003057" - AT5G53420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003057AT5G53420 (E=5e-064) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- CCT domain (InterPro-IPR010402); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G27900.2); Has 863 Blast hits to 863 proteins in 62 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink). (290 aa)    
Predicted Functional Partners:
Bra018808
AT1G49650 (E=3e-153) | cell death associated protein-related (381 aa)
           
  0.489
Bra040442
AT3G63280 (E=5e-183) ATNEK4 | ATNEK4 (NIMA-RELATED KINASE 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (594 aa)
           
  0.476
Bra021519
AT3G13940 (E=2e-108) | DNA binding / DNA-directed RNA polymerase (428 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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