STRINGSTRING
Bra003064 protein (Brassica rapa) - STRING interaction network
"Bra003064" - AT5G53340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003064AT5G53340 (E=1e-181) | galactosyltransferase family protein (333 aa)    
Predicted Functional Partners:
Bra030055
AT1G27600 (E=1e-167) | glycosyl transferase family 43 protein (385 aa)
         
  0.705
Bra012145
AT5G67230 (E=5e-193) | glycosyl transferase family 43 protein (472 aa)
         
  0.705
Bra011745
AT4G36890 (E=5e-184) IRX14 | IRX14 (irregular xylem 14); transferase, transferring glycosyl groups / xylosyltransferase (518 aa)
         
  0.705
Bra010929
AT1G27600 (E=4e-167) | glycosyl transferase family 43 protein (388 aa)
         
  0.705
Bra005218
AT2G37090 (E=2e-177) IRX9 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (347 aa)
         
  0.705
Bra033408
AT1G03520 (E=2e-206) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (1314 aa)
           
  0.482
Bra016161
AT1G71070 (E=5e-198) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (398 aa)
     
   
  0.476
Bra007960
AT1G71070 (E=4e-204) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (395 aa)
     
   
  0.476
Bra003937
AT1G71070 (E=7e-203) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (397 aa)
     
   
  0.476
Bra036442
AT3G03690 (E=4e-141) UNE7 | UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups (281 aa)
           
  0.475
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]