STRINGSTRING
Bra003065 protein (Brassica rapa) - STRING interaction network
"Bra003065" - AT5G53330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
Textmining
[Homology]
Score
Bra003065AT5G53330 (E=2e-076) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro-IPR015940); Has 28 Blast hits to 28 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (209 aa)    
Predicted Functional Partners:
Bra009657
AT2G17200 (E=6e-206) | ubiquitin family protein (552 aa)
       
 
  0.505
Bra037281
AT2G17200 (E=4e-207) | ubiquitin family protein (542 aa)
       
 
  0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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