STRINGSTRING
Bra003069 protein (Brassica rapa) - STRING interaction network
"Bra003069" - AT5G53280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003069AT5G53280 (E=7e-086) PDV1 | PDV1 (PLASTID DIVISION1) (231 aa)    
Predicted Functional Partners:
Bra013085
AT2G16070 (E=9e-077) PDV2 | PDV2 (PLASTID DIVISION2) (285 aa)
       
 
  0.582
Bra001959
AT2G16070 (E=8e-086) PDV2 | PDV2 (PLASTID DIVISION2) (287 aa)
       
 
  0.582
Bra033637
AT5G42480 (E=0.0) ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding (783 aa)
           
  0.446
Bra022392
AT3G19180 (E=0.0) ARC6H, PARC6 | ARC6H (807 aa)
           
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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