STRINGSTRING
Bra003073 protein (Brassica rapa) - STRING interaction network
"Bra003073" - AT5G53210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003073AT5G53210 (E=1e-118) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor (433 aa)    
Predicted Functional Partners:
Bra016749
AT1G12860 (E=2e-129) SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor (433 aa)
       
 
  0.768
Bra025226
AT3G26744 (E=2e-192) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor (497 aa)
       
 
  0.716
Bra020994
AT4G18710 (E=2e-223) BIN2, DWF12, UCU1, ATSK21, SK21 | BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase (380 aa)
       
 
  0.635
Bra003549
AT1G80080 (E=2e-207) TMM, AtRLP17 | TMM (TOO MANY MOUTHS); protein binding / receptor (497 aa)
     
   
  0.593
Bra034246
AT3G26744 (E=3e-116) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor (418 aa)
       
 
  0.576
Bra032947
AT3G26744 (E=1e-121) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor (442 aa)
       
 
  0.576
Bra019794
AT1G12860 (E=5e-122) SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor (425 aa)
       
 
  0.576
Bra027792
AT1G63700 (E=0.0) YDA, MAPKKK4 | YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (878 aa)
           
  0.574
Bra031145
AT2G20875 (E=3e-038) EPF1 | EPF1 (EPIDERMAL PATTERNING FACTOR 1) (102 aa)
           
  0.542
Bra035955
AT5G60880 (E=1e-087) | unknown protein (261 aa)
           
  0.540
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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