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Bra003076 protein (Brassica rapa) - STRING interaction network
"Bra003076" - AT5G53180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003076AT5G53180 (E=1e-087) ATPTB2, PTB2 | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding (249 aa)    
Predicted Functional Partners:
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
       
    0.923
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
         
  0.867
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.765
Bra036267
AT4G02430 (E=4e-088) | pre-mRNA splicing factor, putative / SR1 protein, putative (312 aa)
     
  0.732
Bra029955
AT3G49430 (E=4e-087) SRp34a | SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding (260 aa)
     
  0.732
Bra019595
AT3G49430 (E=1e-086) SRp34a | SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding (285 aa)
     
  0.732
Bra018581
AT1G09140 (E=7e-082) | SF2/ASF-like splicing modulator (SRP30) (232 aa)
     
  0.732
Bra018550
AT1G09140 (E=1e-061) | SF2/ASF-like splicing modulator (SRP30) (261 aa)
     
  0.732
Bra017986
AT3G49430 (E=1e-085) SRp34a | SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding (284 aa)
     
  0.732
Bra035318
AT2G43370 (E=1e-011) | U1 small nuclear ribonucleoprotein 70 kDa, putative (127 aa)
     
  0.731
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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