STRINGSTRING
Bra003077 protein (Brassica rapa) - STRING interaction network
"Bra003077" - AT5G53160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003077AT5G53160 (E=2e-090) | unknown protein (184 aa)    
Predicted Functional Partners:
Bra025964
AT1G17550 (E=2e-234) HAB2 | HAB2; catalytic/ protein serine/threonine phosphatase (508 aa)
       
  0.954
Bra016034
AT1G72770 (E=6e-204) HAB1 | HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase (484 aa)
       
  0.954
Bra013945
AT4G26080 (E=2e-182) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (425 aa)
       
  0.954
Bra010441
AT4G26080 (E=4e-191) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (422 aa)
       
  0.954
Bra034845
AT3G11410 (E=8e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (399 aa)
       
  0.933
Bra031574
AT1G07430 (E=1e-184) | protein phosphatase 2C, putative / PP2C, putative (436 aa)
       
  0.933
Bra018398
AT2G29380 (E=4e-144) | protein phosphatase 2C, putative / PP2C, putative (366 aa)
       
  0.933
Bra015579
AT1G07430 (E=3e-153) | protein phosphatase 2C, putative / PP2C, putative (426 aa)
       
  0.933
Bra002594
AT5G59220 (E=5e-154) | protein phosphatase 2C, putative / PP2C, putative (412 aa)
       
  0.933
Bra002038
AT3G11410 (E=9e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (380 aa)
       
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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