STRINGSTRING
Bra003082 protein (Brassica rapa) - STRING interaction network
"Bra003082" - AT5G53120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003082AT5G53120 (E=9e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (361 aa)    
Predicted Functional Partners:
Bra034353
AT2G27450 (E=5e-166) NLP1, ATNLP1, CPA | NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (297 aa)
   
 
  0.972
Bra021458
AT3G02470 (E=7e-173) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (429 aa)
     
 
  0.956
Bra001046
AT3G02470 (E=8e-179) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (444 aa)
     
 
  0.956
Bra023699
AT5G18930 (E=2e-167) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (353 aa)
     
 
  0.948
Bra008662
AT5G15950 (E=1e-192) | adenosylmethionine decarboxylase family protein (368 aa)
     
 
  0.948
Bra006485
AT5G18930 (E=3e-166) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (346 aa)
     
 
  0.948
Bra002194
AT5G18930 (E=1e-176) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (346 aa)
     
 
  0.948
Bra039742
AT1G65840 (E=1e-273) ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4); amine oxidase/ polyamine oxidase (497 aa)
         
  0.935
Bra006210
AT5G13700 (E=9e-237) ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine oxidase (471 aa)
         
  0.933
Bra037741
AT2G43020 (E=5e-267) ATPAO2 | ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase (485 aa)
         
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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