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Bra003084 protein (Brassica rapa) - STRING interaction network
"Bra003084" - AT5G53070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003084AT5G53070 (E=6e-103) | ribosomal protein L9 family protein (220 aa)    
Predicted Functional Partners:
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
     
  0.979
Bra017715
AT4G35490 (E=1e-068) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
     
  0.979
Bra017714
AT4G35490 (E=4e-072) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
     
  0.979
Bra016581.1-P
AT1G32990 (E=7e-062) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (118 aa)
     
  0.979
Bra007466
AT3G59650 (E=9e-064) | mitochondrial ribosomal protein L51/S25/CI-B8 family protein (119 aa)
     
  0.972
Bra003383
AT3G59650 (E=3e-029) | mitochondrial ribosomal protein L51/S25/CI-B8 family protein (151 aa)
     
  0.967
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
     
  0.967
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
     
  0.967
Bra029017
AT5G54600 (E=8e-063) | 50S ribosomal protein L24, chloroplast (CL24) (128 aa)
     
    0.965
Bra009692
AT5G23535 (E=3e-090) | KOW domain-containing protein (159 aa)
     
    0.965
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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