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Bra003085 protein (Brassica rapa) - STRING interaction network
"Bra003085" - AT5G53060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003085AT5G53060 (E=1e-265) | KH domain-containing protein (639 aa)    
Predicted Functional Partners:
Bra005798
AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein (306 aa)
     
  0.968
Bra038764
AT4G21670 (E=0.0) CPL1, FRY2, ATCPL1 | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase (947 aa)
     
 
  0.937
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
         
  0.923
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
    0.919
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
         
  0.872
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.761
Bra023895
AT3G21215 (E=8e-108) | RNA-binding protein, putative (306 aa)
     
  0.755
Bra038697
AT3G12130 (E=1e-078) | KH domain-containing protein / zinc finger (CCCH type) family protein (245 aa)
       
      0.752
Bra034776
AT3G12130 (E=1e-095) | KH domain-containing protein / zinc finger (CCCH type) family protein (244 aa)
       
      0.752
Bra001436
AT3G12130 (E=1e-084) | KH domain-containing protein / zinc finger (CCCH type) family protein (235 aa)
       
      0.752
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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