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Bra003090 protein (Brassica rapa) - STRING interaction network
"Bra003090" - AT5G53020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003090AT5G53020 (E=2e-253) | unknown protein (709 aa)    
Predicted Functional Partners:
Bra036790
AT3G51570 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1222 aa)
           
  0.606
Bra026776
AT1G15240 (E=0.0) | phox (PX) domain-containing protein (1017 aa)
           
  0.579
Bra019892
AT1G10900 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (759 aa)
           
  0.539
Bra035741
AT3G20820 (E=2e-189) | leucine-rich repeat family protein (365 aa)
           
  0.481
Bra015900
AT1G74600 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (796 aa)
           
  0.479
Bra027121
AT1G60890 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (779 aa)
           
  0.456
Bra034293
AT2G26140 (E=0.0) ftsh4 | ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase (715 aa)
           
  0.406
Bra000309
AT2G43520 (E=4e-031) ATTI2 | ATTI2; serine-type endopeptidase inhibitor (92 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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