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Bra003096 protein (Brassica rapa) - STRING interaction network
"Bra003096" - AT5G52910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003096AT5G52910 (E=4e-275) ATIM | ATIM (TIMELESS) (1174 aa)    
Predicted Functional Partners:
Bra040603
AT3G02820 (E=3e-125) | zinc knuckle (CCHC-type) family protein (288 aa)
     
  0.993
Bra013068
AT2G16440 (E=0.0) MCM4 | DNA replication licensing factor, putative (825 aa)
     
 
  0.979
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
     
 
  0.971
Bra022027
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (776 aa)
     
 
  0.971
Bra040301
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (931 aa)
     
 
  0.969
Bra014033
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (927 aa)
     
 
  0.969
Bra013131
AT2G14050 (E=0.0) MCM9 | MCM9; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (658 aa)
     
 
  0.969
Bra036296
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (711 aa)
     
 
  0.952
Bra000897
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (718 aa)
     
 
  0.952
Bra039520
AT5G44635 (E=3e-112) MCM6 | minichromosome maintenance family protein / MCM family protein (404 aa)
     
 
  0.950
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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