STRINGSTRING
Bra003109 protein (Brassica rapa) - STRING interaction network
"Bra003109" - AT5G52840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003109AT5G52840 (E=4e-089) | NADH-ubiquinone oxidoreductase-related (169 aa)    
Predicted Functional Partners:
Bra038706
AT3G12260 (E=1e-060) | complex 1 family protein / LVR family protein (133 aa)
     
  0.994
Bra001444
AT3G12260 (E=5e-061) | complex 1 family protein / LVR family protein (133 aa)
     
  0.994
Bra034645
AT4G34700 (E=9e-040) | complex 1 family protein / LVR family protein (155 aa)
     
  0.990
Bra017671
AT4G34700 (E=2e-066) | complex 1 family protein / LVR family protein (117 aa)
     
  0.990
Bra011553
AT4G34700 (E=5e-065) | complex 1 family protein / LVR family protein (117 aa)
     
  0.990
Bra037522
AT5G47890 (E=3e-044) | NADH-ubiquinone oxidoreductase B8 subunit, putative (98 aa)
     
  0.989
Bra020725
AT5G47890 (E=2e-042) | NADH-ubiquinone oxidoreductase B8 subunit, putative (98 aa)
     
  0.989
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
     
  0.971
Bra000873
AT4G02580 (E=1e-144) | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (255 aa)
     
  0.971
Bra023341
AT5G11770 (E=3e-082) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (217 aa)
     
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]