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Bra003110 protein (Brassica rapa) - STRING interaction network
"Bra003110" - AT1G63440 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra003110AT1G63440 (E=0.0) HMA5 | HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (977 aa)    
Predicted Functional Partners:
Bra040643
AT3G05220 (E=1e-035) | heavy-metal-associated domain-containing protein (556 aa)
     
  0.914
Bra040245
AT3G05920 (E=5e-031) | heavy-metal-associated domain-containing protein (142 aa)
     
  0.914
Bra039371
AT3G13140 (E=4e-027) | hydroxyproline-rich glycoprotein family protein (187 aa)
     
  0.914
Bra038642
AT5G63530 (E=1e-058) ATFP3, FP3 | ATFP3; metal ion binding / transition metal ion binding (291 aa)
     
  0.914
Bra037919
AT4G10465 (E=2e-081) | metal ion binding (182 aa)
     
  0.914
Bra037865
AT4G08570 (E=7e-060) | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (150 aa)
     
  0.914
Bra035839
AT5G63530 (E=7e-072) ATFP3, FP3 | ATFP3; metal ion binding / transition metal ion binding (353 aa)
     
  0.914
Bra035681
AT2G28660 (E=8e-072) | copper-binding family protein (265 aa)
     
  0.914
Bra034702
AT3G13140 (E=4e-023) | hydroxyproline-rich glycoprotein family protein (180 aa)
     
  0.914
Bra034669
AT4G35060 (E=3e-081) | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (154 aa)
     
  0.914
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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