STRINGSTRING
Bra003113 protein (Brassica rapa) - STRING interaction network
"Bra003113" - Uncharacterized protein in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003113Uncharacterized protein (178 aa)    
Predicted Functional Partners:
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.946
Bra030483
AT5G06350 (E=8e-033) | binding (684 aa)
     
 
  0.945
Bra009187
AT5G27010 (E=0.0) | binding (878 aa)
     
 
  0.944
Bra026921
AT1G13160 (E=9e-292) | SDA1 family protein (808 aa)
     
      0.922
Bra019003
AT1G52980 (E=3e-247) | GTP-binding family protein (582 aa)
     
 
  0.882
Bra022611
AT5G52820 (E=3e-271) | WD-40 repeat family protein / notchless protein, putative (476 aa)
     
 
  0.881
Bra009201
AT5G52820 (E=6e-204) | WD-40 repeat family protein / notchless protein, putative (480 aa)
     
 
  0.881
Bra003111
AT5G52820 (E=4e-098) | WD-40 repeat family protein / notchless protein, putative (232 aa)
     
 
  0.881
Bra014613
AT3G57660 (E=6e-023) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding (128 aa)
     
        0.880
Bra007345
AT3G57660 (E=0.0) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1640 aa)
     
        0.880
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]