STRINGSTRING
Bra003114 protein (Brassica rapa) - STRING interaction network
"Bra003114" - AT5G52750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003114AT5G52750 (E=2e-039) | heavy-metal-associated domain-containing protein (139 aa)    
Predicted Functional Partners:
Bra021771
AT2G32030 (E=1e-087) | GCN5-related N-acetyltransferase (GNAT) family protein (199 aa)
     
   
  0.529
Bra028438
AT5G39670 (E=9e-081) | calcium-binding EF hand family protein (196 aa)
     
   
  0.508
Bra027708
AT1G64610 (E=2e-205) | WD-40 repeat family protein (592 aa)
     
   
  0.482
Bra019503
AT3G47480 (E=8e-065) | calcium-binding EF hand family protein (185 aa)
     
   
  0.466
Bra018143
AT3G47480 (E=2e-079) | calcium-binding EF hand family protein (183 aa)
     
   
  0.466
Bra021770
AT2G32020 (E=3e-090) | GCN5-related N-acetyltransferase (GNAT) family protein (184 aa)
     
   
  0.417
Bra005632
AT2G32020 (E=2e-089) | GCN5-related N-acetyltransferase (GNAT) family protein (184 aa)
     
   
  0.417
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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