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Bra003118 protein (Brassica rapa) - STRING interaction network
"Bra003118" - AT4G25740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003118AT4G25740 (E=2e-046) | 40S ribosomal protein S10 (RPS10A) (179 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
     
  0.999
Bra023511
AT5G15200 (E=1e-094) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra006289
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra006289.1-P
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
     
  0.999
Bra039182
AT3G02560 (E=4e-095) | 40S ribosomal protein S7 (RPS7B) (208 aa)
     
  0.999
Bra023553
AT5G16120 (E=6e-166) | hydrolase, alpha/beta fold family protein (554 aa)
     
  0.999
Bra021431
AT3G02560 (E=1e-094) | 40S ribosomal protein S7 (RPS7B) (351 aa)
     
  0.999
Bra008643
AT5G16130 (E=6e-098) | 40S ribosomal protein S7 (RPS7C) (190 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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