STRINGSTRING
Bra003119 protein (Brassica rapa) - STRING interaction network
"Bra003119" - AT5G52640 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003119AT5G52640 (E=3e-228) HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1 | ATHSP90.1 (HEAT SHOCK PROTEIN 90.1); ATP binding / unfolded protein binding (608 aa)    
Predicted Functional Partners:
Bra035239
AT4G11260 (E=6e-166) ATSGT1B, ETA3, RPR1, EDM1, SGT1B | SGT1B; protein binding (355 aa)
     
  0.998
Bra019295
AT4G23570 (E=1e-161) SGT1A | SGT1A; protein binding (343 aa)
     
  0.998
Bra013710
AT4G23570 (E=6e-123) SGT1A | SGT1A; protein binding (322 aa)
     
  0.998
Bra000741
AT4G11260 (E=9e-157) ATSGT1B, ETA3, RPR1, EDM1, SGT1B | SGT1B; protein binding (358 aa)
     
  0.998
Bra015116
AT3G25210 (E=2e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G27800.1); Has 13348 Blast hits to 4225 proteins in 143 species- Archae - 3; Bacteria - 6; Metazoa - 114; Fungi - 126; Plants - 12736; Viruses - 0; Other Eukaryotes - 363 (source- NCBI BLink). (829 aa)
     
  0.996
Bra040123
AT3G04710 (E=3e-205) | ankyrin repeat family protein (594 aa)
     
  0.996
Bra001120
AT3G04710 (E=2e-210) | ankyrin repeat family protein (456 aa)
     
  0.996
Bra036648
AT4G12400 (E=2e-216) | stress-inducible protein, putative (553 aa)
     
  0.995
Bra027022
AT1G62740 (E=4e-271) | stress-inducible protein, putative (567 aa)
     
  0.995
Bra026980
AT1G12270 (E=1e-137) | stress-inducible protein, putative (455 aa)
     
  0.995
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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