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Bra003121 protein (Brassica rapa) - STRING interaction network
"Bra003121" - AT5G52570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003121AT5G52570 (E=1e-099) BETA-OHASE 2, B2, CHY2 | BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); carotene beta-ring hydroxylase (303 aa)    
Predicted Functional Partners:
Bra012127
AT5G67030 (E=0.0) ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase ; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (668 aa)
     
 
  0.952
Bra038437
AT1G31800 (E=4e-234) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (544 aa)
         
  0.950
Bra029825
AT3G10230 (E=4e-257) LYC | LYC (LYCOPENE CYCLASE); lycopene beta cyclase (493 aa)
         
  0.943
Bra018616
AT1G08550 (E=2e-208) NPQ1, AVDE1 | NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase (457 aa)
         
  0.933
Bra037130
AT5G67030 (E=4e-302) ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase (901 aa)
     
 
  0.786
Bra017304
AT2G35660 (E=8e-214) CTF2A | CTF2A; monooxygenase/ oxidoreductase (445 aa)
     
 
  0.739
Bra038068
AT4G15760 (E=3e-120) MO1 | MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (398 aa)
         
  0.738
Bra033568
AT4G38540 (E=5e-183) | monooxygenase, putative (MO2) (401 aa)
         
  0.738
Bra012767
AT4G15760 (E=2e-190) MO1 | MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (398 aa)
         
  0.738
Bra008970
AT5G11330 (E=3e-203) | monooxygenase family protein (398 aa)
         
  0.738
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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