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Bra003126 protein (Brassica rapa) - STRING interaction network
"Bra003126" - AT3G53260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003126AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (707 aa)    
Predicted Functional Partners:
Bra018311
AT2G30490 (E=3e-256) ATC4H, C4H, CYP73A5 | C4H (CINNAMATE-4-HYDROXYLASE); trans-cinnamate 4-monooxygenase (505 aa)
     
 
  0.954
Bra030429
AT1G51680 (E=7e-274) 4CL1, 4CL.1, AT4CL1 | 4CL1 (4-COUMARATE-COA LIGASE 1); 4-coumarate-CoA ligase (552 aa)
   
 
  0.949
Bra031266
AT3G21240 (E=7e-274) 4CL2, AT4CL2 | 4CL2 (4-COUMARATE-COA LIGASE 2); 4-coumarate-CoA ligase (552 aa)
   
 
  0.948
Bra004109
AT1G65060 (E=1e-253) 4CL3 | 4CL3; 4-coumarate-CoA ligase (556 aa)
       
  0.934
Bra036646
AT1G62940 (E=1e-268) ACOS5 | ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase (1479 aa)
       
  0.934
Bra029561
AT4G05160 (E=2e-266) | 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (542 aa)
       
  0.934
Bra013369
AT4G19010 (E=5e-269) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (573 aa)
       
  0.934
Bra029831
AT3G10340 (E=0.0) PAL4 | PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic (706 aa)
   
 
 
0.910
Bra008685
AT3G02180 (E=1e-014) SP1L3 | SP1L3 (SPIRAL 1-LIKE3) (129 aa)
       
      0.909
Bra026753
AT1G15670 (E=9e-173) | kelch repeat-containing F-box family protein (358 aa)
       
      0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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