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Bra003135 protein (Brassica rapa) - STRING interaction network
"Bra003135" - AT3G53450 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra003135AT3G53450 (E=3e-076) | unknown protein ; Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (167 aa)    
Predicted Functional Partners:
Bra006590
AT5G20990 (E=0.0) B73, SIR4, CNX, CHL6, CNX1 | B73; molybdenum ion binding (672 aa)
     
 
  0.681
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
   
 
  0.645
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
   
 
  0.645
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
   
 
  0.645
Bra011157
AT4G30000 (E=6e-256) | dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative (525 aa)
              0.555
Bra040938
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein (2127 aa)
   
        0.466
Bra035773
AT3G20540 (E=0.0) POLGAMMA1 | POLGAMMA1 (polymerase gamma 1); 3’-5’ exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding (1004 aa)
   
        0.466
Bra030472
AT1G50840 (E=0.0) POLGAMMA2 | POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase (1168 aa)
   
        0.466
Bra011372
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein (2299 aa)
   
        0.466
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
   
        0.460
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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