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Bra003139 protein (Brassica rapa) - STRING interaction network
"Bra003139" - AT3G53500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003139AT3G53500 (E=2e-114) RSZ32 | zinc knuckle (CCHC-type) family protein (291 aa)    
Predicted Functional Partners:
Bra024276
AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding (280 aa)
     
  0.981
Bra007633
AT2G46620 (E=2e-216) | AAA-type ATPase family protein (708 aa)
     
  0.974
Bra036267
AT4G02430 (E=4e-088) | pre-mRNA splicing factor, putative / SR1 protein, putative (312 aa)
     
0.964
Bra018581
AT1G09140 (E=7e-082) | SF2/ASF-like splicing modulator (SRP30) (232 aa)
     
0.963
Bra029146
AT5G52040 (E=1e-106) ATRSP41 | ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (418 aa)
     
0.961
Bra013895
AT4G25500 (E=4e-111) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (339 aa)
     
0.960
Bra010459
AT4G25500 (E=9e-143) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (348 aa)
     
0.960
Bra004523
AT2G46610 (E=5e-094) | arginine/serine-rich splicing factor, putative (246 aa)
     
0.959
Bra011910
AT1G55310 (E=2e-057) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding (319 aa)
     
0.959
Bra039394
AT3G13570 (E=1e-069) SCL30A | SCL30a; RNA binding / nucleic acid binding / nucleotide binding (263 aa)
     
 
  0.954
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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