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Bra003140 protein (Brassica rapa) - STRING interaction network
"Bra003140" - AT5G06160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003140AT5G06160 (E=5e-026) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (241 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.988
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
     
  0.987
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
     
  0.978
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
     
  0.978
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
     
  0.978
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
     
  0.978
Bra018324
AT2G30260 (E=1e-094) U2B’’ | U2B’’ (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (228 aa)
     
  0.977
Bra004445
AT2G47580 (E=3e-087) U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding (258 aa)
     
  0.977
Bra032181
AT5G06520 (E=4e-017) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (216 aa)
     
  0.977
Bra031050
AT5G06520 (E=3e-020) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (398 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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