STRINGSTRING
Bra003145 protein (Brassica rapa) - STRING interaction network
"Bra003145" - AT3G53560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003145AT3G53560 (E=4e-123) | chloroplast lumen common family protein (328 aa)    
Predicted Functional Partners:
Bra008097
AT1G73470 (E=1e-149) | unknown protein (356 aa)
   
          0.490
Bra009067
AT5G09995 (E=2e-097) | unknown protein (247 aa)
   
          0.486
Bra034190
AT4G03150 (E=2e-067) | unknown protein (178 aa)
   
        0.471
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
          0.470
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
   
          0.467
Bra009194
AT5G06430 (E=1e-068) | thioredoxin-related (191 aa)
   
          0.466
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
          0.463
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
          0.463
Bra015367
AT1G04940 (E=2e-133) TIC20 | TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) (276 aa)
   
          0.457
Bra020481
AT5G25050 (E=1e-254) | integral membrane transporter family protein (498 aa)
   
          0.455
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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