STRINGSTRING
Bra003146 protein (Brassica rapa) - STRING interaction network
"Bra003146" - AT3G53570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003146AT3G53570 (E=4e-231) AFC1, AME2 | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (449 aa)    
Predicted Functional Partners:
Bra019629
AT3G53030 (E=1e-027) SRPK4 | SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase (84 aa)
     
 
  0.768
Bra017688
AT2G17530 (E=7e-017) | protein kinase family protein (103 aa)
     
 
  0.768
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
 
  0.657
Bra020218
AT5G22840 (E=9e-122) | protein kinase family protein (525 aa)
     
 
0.655
Bra002433
AT5G22840 (E=3e-267) | protein kinase family protein (536 aa)
     
 
0.655
Bra006970
AT3G53030 (E=5e-117) SRPK4 | SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase (617 aa)
     
 
0.654
Bra028159
AT4G35500 (E=1e-181) | protein kinase family protein (368 aa)
     
 
0.647
Bra011619
AT4G35500 (E=1e-224) | protein kinase family protein (444 aa)
     
 
0.647
Bra017716
AT4G35500 (E=2e-220) | protein kinase family protein (430 aa)
     
 
0.646
Bra002070
AT2G17530 (E=4e-224) | protein kinase family protein (437 aa)
     
 
0.644
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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