STRINGSTRING
Bra003163 protein (Brassica rapa) - STRING interaction network
"Bra003163" - AT3G53990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003163AT3G53990 (E=9e-080) | universal stress protein (USP) family protein (159 aa)    
Predicted Functional Partners:
Bra021440
AT2G47710 (E=6e-079) | universal stress protein (USP) family protein (162 aa)
   
     
  0.525
Bra020665
AT5G49050 (E=2e-053) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Rossmann-like alpha/beta/alpha sandwich fold (InterPro-IPR014729); BEST Arabidopsis thaliana protein match is- universal stress protein (USP) family protein (TAIR-AT2G47710.1); Has 83 Blast hits to 82 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (167 aa)
   
          0.497
Bra040802
AT4G13450 (E=9e-083) | universal stress protein (USP) family protein (220 aa)
           
  0.406
Bra036356
AT3G25930 (E=5e-060) | universal stress protein (USP) family protein (150 aa)
           
  0.406
Bra034874
AT4G13450 (E=1e-073) | universal stress protein (USP) family protein (222 aa)
           
  0.406
Bra031943
AT5G63940 (E=4e-195) | protein kinase family protein (686 aa)
           
  0.406
Bra022543
AT5G51270 (E=2e-229) | protein kinase family protein (791 aa)
           
  0.406
Bra021501
AT3G13690 (E=0.0) | protein kinase family protein (752 aa)
           
  0.406
Bra020547
AT5G26150 (E=7e-311) | protein kinase family protein (704 aa)
           
  0.406
Bra018013
AT3G49060 (E=0.0) | protein kinase family protein / U-box domain-containing protein (803 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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