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Bra003174 protein (Brassica rapa) - STRING interaction network
"Bra003174" - AT3G54170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003174AT3G54170 (E=1e-043) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding (297 aa)    
Predicted Functional Partners:
Bra035280
AT4G10760 (E=2e-210) EMB1706, MTA | MTA (MRNA ADENOSINE METHYLASE); S-adenosylmethionine-dependent methyltransferase/ methyltransferase (532 aa)
     
  0.971
Bra001163
AT3G05680 (E=0.0) EMB2016 | EMB2016 (embryo defective 2016) (2590 aa)
       
      0.937
Bra037775
AT5G64350 (E=3e-048) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
       
 
  0.784
Bra024287
AT5G64350 (E=1e-055) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
       
 
  0.784
Bra037896
AT4G09980 (E=0.0) EMB1691 | EMB1691 (EMBRYO DEFECTIVE 1691); S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding (932 aa)
     
  0.764
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
       
 
  0.626
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
     
 
    0.575
Bra013145
AT2G13540 (E=0.0) ENS, ABH1, CBP80, ATCBP80 | ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding (845 aa)
     
 
    0.556
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
     
 
    0.555
Bra038761
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1126 aa)
     
 
    0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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