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Bra003179 protein (Brassica rapa) - STRING interaction network
"Bra003179" - AT3G54350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003179AT3G54350 (E=1e-198) emb1967 | emb1967 (embryo defective 1967) (556 aa)    
Predicted Functional Partners:
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
       
  0.941
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
    0.716
Bra037051
AT4G32551 (E=0.0) LUG, RON2 | LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (913 aa)
     
  0.563
Bra022896
AT2G32700 (E=0.0) LUH | WD-40 repeat family protein (1155 aa)
     
  0.563
Bra011355
AT4G32551 (E=9e-294) LUG, RON2 | LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (790 aa)
     
  0.563
Bra004123
AT1G65650 (E=3e-160) UCH2 | UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease (329 aa)
       
    0.557
Bra038273
AT3G45830 (E=6e-267) | unknown protein (1083 aa)
     
  0.553
Bra027514
AT5G43920 (E=1e-254) | transducin family protein / WD-40 repeat family protein (1112 aa)
     
  0.552
Bra034758
AT3G12380 (E=1e-073) ATARP5 | ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton (412 aa)
     
    0.549
Bra014632
AT3G57300 (E=0.0) INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding (1514 aa)
     
    0.548
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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