STRINGSTRING
Bra003180 protein (Brassica rapa) - STRING interaction network
"Bra003180" - AT3G54360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003180AT3G54360 (E=6e-178) | protein binding / zinc ion binding (401 aa)    
Predicted Functional Partners:
Bra024896
AT2G01220 (E=8e-194) | nucleotidyltransferase (403 aa)
           
  0.512
Bra002435
AT5G22875 (E=8e-035) | unknown protein (69 aa)
           
  0.512
Bra037775
AT5G64350 (E=3e-048) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
           
  0.468
Bra024287
AT5G64350 (E=1e-055) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
           
  0.468
Bra022105
AT3G01910 (E=1e-213) SOX, AT-SO, AtSO | SOX (SULFITE OXIDASE); sulfite oxidase (394 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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