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Bra003182 protein (Brassica rapa) - STRING interaction network
"Bra003182" - AT3G49645 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003182AT3G49645 (E=5e-036) | unknown protein (210 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
    0.651
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
    0.651
Bra008889
AT5G12410 (E=3e-103) | THUMP domain-containing protein (365 aa)
     
 
  0.632
Bra006159
AT5G12410 (E=4e-111) | THUMP domain-containing protein (361 aa)
     
 
  0.632
Bra037950
AT3G62120 (E=2e-010) | tRNA synthetase class II (G, H, P and S) family protein (120 aa)
       
  0.604
Bra037949
AT3G62120 (E=1e-019) | tRNA synthetase class II (G, H, P and S) family protein (147 aa)
       
  0.604
Bra029197
AT5G10880 (E=3e-070) | tRNA synthetase-related / tRNA ligase-related (218 aa)
       
  0.604
Bra028313
AT5G52520 (E=5e-098) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (408 aa)
       
  0.604
Bra028248
AT5G52520 (E=4e-090) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (538 aa)
       
  0.604
Bra022597
AT5G52520 (E=1e-290) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (542 aa)
       
  0.604
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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