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Bra003186 protein (Brassica rapa) - STRING interaction network
"Bra003186" - AT3G54470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003186AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)    
Predicted Functional Partners:
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
 
0.999
Bra007866
AT3G27740 (E=4e-220) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (424 aa)
   
 
  0.998
Bra004395
AT3G27740 (E=6e-229) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (430 aa)
   
 
  0.998
Bra032344
AT1G29900 (E=0.0) CARB | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic (1176 aa)
   
  0.997
Bra035791
AT3G20320 (E=5e-186) TGD2 | TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2); lipid transporter/ phospholipid binding (777 aa)
   
 
  0.996
Bra038263
AT3G20330 (E=3e-106) | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) (363 aa)
   
 
  0.995
Bra026504
AT5G23300 (E=1e-229) PYRD | PYRD (pyrimidine d); dihydroorotate dehydrogenase (458 aa)
   
  0.987
Bra009669
AT5G23300 (E=7e-226) PYRD | PYRD (pyrimidine d); dihydroorotate dehydrogenase (459 aa)
   
  0.987
Bra013661
AT4G22930 (E=1e-195) PYR4, DHOASE | PYR4 (PYRIMIDIN 4); dihydroorotase/ hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides (933 aa)
   
 
  0.987
Bra039077
AT3G27440 (E=4e-243) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (788 aa)
   
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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