STRINGSTRING
Bra003187 protein (Brassica rapa) - STRING interaction network
"Bra003187" - AT3G54500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003187AT3G54500 (E=9e-243) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- dentin sialophosphoprotein-related (TAIR-AT5G64170.2); Has 108 Blast hits to 102 proteins in 33 species- Archae - 0; Bacteria - 4; Metazoa - 36; Fungi - 7; Plants - 52; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink). (613 aa)    
Predicted Functional Partners:
Bra009562
AT5G02840 (E=7e-099) LCL1 | LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor (312 aa)
     
 
  0.808
Bra005751
AT5G02840 (E=1e-100) LCL1 | LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor (283 aa)
     
 
  0.808
Bra029111
AT5G52660 (E=5e-113) | myb family transcription factor (320 aa)
     
 
  0.807
Bra034074
AT3G09600 (E=6e-050) | myb family transcription factor (263 aa)
     
 
  0.755
Bra033257
AT1G01520 (E=8e-114) | myb family transcription factor (270 aa)
     
 
  0.755
Bra033291
AT1G01060 (E=3e-132) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (607 aa)
     
 
  0.703
Bra030496
AT1G01060 (E=5e-099) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (586 aa)
     
 
  0.702
Bra004503
AT2G46830 (E=2e-117) CCA1 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (552 aa)
     
 
  0.701
Bra024273
AT5G64170 (E=6e-248) | dentin sialophosphoprotein-related (607 aa)
     
   
0.485
Bra031968
AT3G03870 (E=3e-068) | unknown protein (258 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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