STRINGSTRING
Bra003190 protein (Brassica rapa) - STRING interaction network
"Bra003190" - AT3G54600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003190AT3G54600 (E=2e-156) | DJ-1 family protein (381 aa)    
Predicted Functional Partners:
Bra018596
AT1G08845 (E=4e-099) | structural constituent of ribosome ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (376 aa)
     
 
  0.781
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
     
  0.779
Bra016811
AT1G11840 (E=2e-155) ATGLX1 | ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding ; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione (283 aa)
     
  0.761
Bra004214
AT1G67280 (E=3e-172) | lactoylglutathione lyase, putative / glyoxalase I, putative (341 aa)
     
  0.761
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
      0.757
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
     
 
  0.725
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
     
    0.708
Bra038667
AT3G11630 (E=3e-043) | 2-cys peroxiredoxin, chloroplast (BAS1) (225 aa)
   
 
  0.673
Bra034824
AT3G11630 (E=7e-113) | 2-cys peroxiredoxin, chloroplast (BAS1) (261 aa)
   
 
  0.673
Bra009181
AT5G06290 (E=1e-118) 2-Cys Prx B | 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (269 aa)
   
 
  0.673
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (5%) [HD]