STRINGSTRING
Bra003192 protein (Brassica rapa) - STRING interaction network
"Bra003192" - AT3G54690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003192AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)    
Predicted Functional Partners:
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
   
  0.999
Bra019695
AT1G63660 (E=1e-012) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (97 aa)
   
  0.994
Bra039220
AT2G23970 (E=4e-121) | defense-related protein, putative (250 aa)
   
  0.993
Bra039219
AT2G23960 (E=1e-105) | defense-related protein, putative (370 aa)
   
  0.993
Bra024068
AT4G30530 (E=7e-120) | defense-related protein, putative (250 aa)
   
  0.993
Bra011201
AT4G30530 (E=5e-120) | defense-related protein, putative (250 aa)
   
  0.993
Bra010283
AT4G30530 (E=1e-122) | defense-related protein, putative (250 aa)
   
  0.993
Bra010282
AT4G30550 (E=7e-126) | glutamine amidotransferase class-I domain-containing protein (255 aa)
   
  0.993
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
     
  0.992
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
 
 
0.986
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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