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Bra003195 protein (Brassica rapa) - STRING interaction network
"Bra003195" - AT4G13420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003195AT4G13420 (E=4e-193) HAK5, ATHAK5 | HAK5 (HIGH AFFINITY K+ TRANSPORTER 5); potassium ion transmembrane transporter/ potassium-sodium symporter ; Potassium transporter (713 aa)    
Predicted Functional Partners:
Bra032037
AT2G26650 (E=0.0) AKT1, ATAKT1 | AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel (860 aa)
           
  0.606
Bra033189
AT4G10310 (E=5e-205) HKT1, ATHKT1 | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter (507 aa)
         
  0.543
Bra014875
AT1G30270 (E=1e-243) CIPK23, SnRK3.23, ATCIPK23, LKS1 | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (479 aa)
       
 
  0.536
Bra037912
AT4G10310 (E=2e-186) HKT1, ATHKT1 | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter (496 aa)
         
  0.525
Bra037910
AT4G10310 (E=1e-128) HKT1, ATHKT1 | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter (513 aa)
         
  0.525
Bra000707
AT4G10310 (E=1e-210) HKT1, ATHKT1 | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter (585 aa)
         
  0.525
Bra033232
AT4G00630 (E=0.0) KEA2, ATKEA2 | KEA2; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1118 aa)
           
  0.497
Bra033231
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1120 aa)
           
  0.497
Bra032651
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1157 aa)
           
  0.497
Bra032572
AT1G01790 (E=2e-179) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (771 aa)
           
  0.497
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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