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Bra003209 protein (Brassica rapa) - STRING interaction network
"Bra003209" - AT3G55120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003209AT3G55120 (E=2e-090) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (227 aa)    
Predicted Functional Partners:
Bra008792
AT5G13930 (E=4e-219) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (395 aa)
     
  0.852
Bra006224
AT5G13930 (E=2e-216) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (396 aa)
     
  0.852
Bra040313
AT2G45400 (E=1e-147) BEN1 | BEN1; binding / catalytic/ coenzyme binding / oxidoreductase, acting on CH-OH group of donors (358 aa)
     
  0.454
Bra038342
AT1G09500 (E=4e-134) | cinnamyl-alcohol dehydrogenase family / CAD family (325 aa)
     
  0.454
Bra037009
AT4G33360 (E=5e-164) | terpene cyclase/mutase-related (335 aa)
     
  0.454
Bra035150
AT1G80820 (E=3e-160) CCR2, ATCCR2 | CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase (332 aa)
     
  0.454
Bra032137
AT2G23910 (E=1e-155) | cinnamoyl-CoA reductase-related (303 aa)
     
  0.454
Bra031666
AT1G09500 (E=6e-136) | cinnamyl-alcohol dehydrogenase family / CAD family (316 aa)
     
  0.454
Bra031403
AT1G61720 (E=3e-143) BAN | BAN (BANYULS); oxidoreductase (338 aa)
     
  0.454
Bra030440
AT1G51410 (E=5e-180) | cinnamyl-alcohol dehydrogenase, putative (CAD) (325 aa)
     
  0.454
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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