STRINGSTRING
Bra003217 protein (Brassica rapa) - STRING interaction network
"Bra003217" - AT3G55560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003217AT3G55560 (E=2e-101) AGF2 | AGF2 (AT-hook protein of GA feedback 2) (298 aa)    
Predicted Functional Partners:
Bra024870
AT1G14900 (E=4e-021) HMGA | HMGA (HIGH MOBILITY GROUP A); DNA binding (191 aa)
           
  0.483
Bra017438
AT1G14900 (E=2e-037) HMGA | HMGA (HIGH MOBILITY GROUP A); DNA binding (164 aa)
           
  0.483
Bra022717
AT5G54390 (E=7e-181) AHL, ATAHL | AHL (ARABIDOPSIS HAL2-LIKE); 3’(2’),5’-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (372 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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