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Bra003221 protein (Brassica rapa) - STRING interaction network
"Bra003221" - AT3G55800 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003221AT3G55800 (E=3e-144) SBPASE | SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase (316 aa)    
Predicted Functional Partners:
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
       
  0.976
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
   
 
  0.968
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
   
 
  0.968
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
   
 
  0.968
Bra031181
AT2G21330 (E=7e-209) | fructose-bisphosphate aldolase, putative (400 aa)
     
 
  0.947
Bra014340
AT2G01140 (E=4e-212) | fructose-bisphosphate aldolase, putative (389 aa)
     
 
  0.947
Bra011884
AT4G38970 (E=1e-169) | fructose-bisphosphate aldolase, putative (409 aa)
     
 
  0.947
Bra028543
AT3G52930 (E=2e-197) | fructose-bisphosphate aldolase, putative (358 aa)
     
 
  0.941
Bra026426
AT4G26530 (E=5e-187) | fructose-bisphosphate aldolase, putative (358 aa)
     
 
  0.941
Bra009517
AT5G03690 (E=4e-195) | fructose-bisphosphate aldolase, putative (359 aa)
     
 
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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