STRINGSTRING
Bra003226 protein (Brassica rapa) - STRING interaction network
"Bra003226" - AT3G56090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003226AT3G56090 (E=6e-100) ATFER3 | ATFER3 (ferritin 3); binding / ferric iron binding / oxidoreductase/ transition metal ion binding ; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation (244 aa)    
Predicted Functional Partners:
Bra016971
AT2G40780 (E=2e-077) | RNA binding / translation initiation factor (171 aa)
       
      0.899
Bra020554
AT3G05870 (E=2e-033) APC11 | APC11; protein binding / ubiquitin-protein ligase/ zinc ion binding (144 aa)
     
      0.889
Bra009912
AT3G05870 (E=1e-033) APC11 | APC11; protein binding / ubiquitin-protein ligase/ zinc ion binding (135 aa)
     
      0.889
Bra036285
AT1G02780 (E=3e-094) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (199 aa)
     
      0.671
Bra033346
AT1G02780 (E=1e-045) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (169 aa)
     
      0.671
Bra032586
AT1G02780 (E=4e-045) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (202 aa)
     
      0.671
Bra030509
AT1G02780 (E=5e-094) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (218 aa)
     
      0.671
Bra022177
AT3G16780 (E=1e-044) | 60S ribosomal protein L19 (RPL19B) (208 aa)
     
      0.671
Bra000887
AT1G02780 (E=1e-073) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (189 aa)
     
      0.671
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
         
  0.580
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (18%) [HD]