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Bra003241 protein (Brassica rapa) - STRING interaction network
"Bra003241" - AT3G56460 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003241AT3G56460 (E=7e-163) | oxidoreductase, zinc-binding dehydrogenase family protein (467 aa)    
Predicted Functional Partners:
Bra038667
AT3G11630 (E=3e-043) | 2-cys peroxiredoxin, chloroplast (BAS1) (225 aa)
     
  0.932
Bra034824
AT3G11630 (E=7e-113) | 2-cys peroxiredoxin, chloroplast (BAS1) (261 aa)
     
  0.932
Bra009181
AT5G06290 (E=1e-118) 2-Cys Prx B | 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (269 aa)
     
  0.932
Bra001415
AT3G11630 (E=8e-106) | 2-cys peroxiredoxin, chloroplast (BAS1) (307 aa)
     
  0.932
Bra040296
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
       
  0.929
Bra029608
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
       
  0.929
Bra024170
AT4G29010 (E=2e-186) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (737 aa)
       
  0.929
Bra011076
AT4G29010 (E=0.0) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (722 aa)
       
  0.929
Bra010347
AT4G29010 (E=0.0) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (734 aa)
       
  0.929
Bra001221
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
       
  0.929
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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