STRINGSTRING
Bra003258 protein (Brassica rapa) - STRING interaction network
"Bra003258" - AT3G56960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003258AT3G56960 (E=3e-300) PIP5K4 | PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4); 1-phosphatidylinositol-4-phosphate 5-kinase (757 aa)    
Predicted Functional Partners:
Bra018107
AT3G55580 (E=3e-058) | regulator of chromosome condensation (RCC1) family protein (254 aa)
     
  0.983
Bra031936
AT5G64070 (E=0.0) PI-4KBETA1, PI4KBETA1 | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1); 1-phosphatidylinositol 4-kinase (1132 aa)
     
  0.972
Bra024264
AT5G64070 (E=0.0) PI-4KBETA1, PI4KBETA1 | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1); 1-phosphatidylinositol 4-kinase (1117 aa)
     
  0.972
Bra040049
AT3G08510 (E=1e-293) ATPLC2 | ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C (542 aa)
     
  0.971
Bra039499
AT3G47290 (E=1e-019) ATPLC8, PLC8 | phosphoinositide-specific phospholipase C family protein (297 aa)
     
  0.971
Bra033567
AT4G38530 (E=3e-206) ATPLC1 | ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1); phospholipase C (530 aa)
     
  0.971
Bra032722
AT5G58690 (E=4e-162) ATPLC5, PLC5 | phosphoinositide-specific phospholipase C family protein (563 aa)
     
  0.971
Bra029697
AT5G58690 (E=9e-168) ATPLC5, PLC5 | phosphoinositide-specific phospholipase C family protein (564 aa)
     
  0.971
Bra020361
AT5G58670 (E=4e-159) ATPLC1, ATPLC, PLC1 | PLC1 (PHOSPHOLIPASE C 1); phospholipase C (528 aa)
     
  0.971
Bra020359
AT5G58700 (E=9e-309) ATPLC4, PLC4 | phosphoinositide-specific phospholipase C family protein (594 aa)
     
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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