STRINGSTRING
Bra003262 protein (Brassica rapa) - STRING interaction network
"Bra003262" - AT3G56990 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003262AT3G56990 (E=1e-293) EDA7 | EDA7 (embryo sac development arrest 7) (708 aa)    
Predicted Functional Partners:
Bra012079
AT5G66530 (E=1e-056) | aldose 1-epimerase family protein (489 aa)
     
 
  0.998
Bra037166
AT5G66540 (E=2e-178) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). ; Involved in nucleolar processing of pre-1 [...] (526 aa)
     
 
  0.998
Bra025791
AT5G66540 (E=3e-018) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). (129 aa)
     
 
  0.998
Bra035936
AT5G61330 (E=9e-153) | rRNA processing protein-related (410 aa)
     
 
  0.997
Bra012968
AT5G61330 (E=6e-159) | rRNA processing protein-related (323 aa)
     
 
  0.997
Bra002529
AT4G04940 (E=3e-054) | transducin family protein / WD-40 repeat family protein (201 aa)
     
 
  0.997
Bra000809
AT4G04940 (E=3e-258) | transducin family protein / WD-40 repeat family protein (889 aa)
     
 
  0.997
Bra040707
AT3G02060 (E=0.0) | DEAD/DEAH box helicase, putative (822 aa)
     
      0.997
Bra034082
AT3G09720 (E=8e-240) | DEAD/DEAH box helicase, putative (545 aa)
     
      0.997
Bra024887
AT2G01440 (E=0.0) | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (974 aa)
     
      0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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