STRINGSTRING
Bra003266 protein (Brassica rapa) - STRING interaction network
"Bra003266" - AT4G29910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003266AT4G29910 (E=3e-222) ORC5, ATORC5 | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5); protein binding (528 aa)    
Predicted Functional Partners:
Bra005184
AT2G37560 (E=7e-189) ORC2, ATORC2 | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2); DNA replication origin binding / protein binding (363 aa)
     
  0.994
Bra008604
AT5G16690 (E=1e-174) ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3); protein binding (675 aa)
     
  0.992
Bra029471
AT4G12620 (E=0.0) ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding (813 aa)
     
  0.992
Bra013169
AT2G07690 (E=0.0) MCM5 | minichromosome maintenance family protein / MCM family protein (727 aa)
     
  0.991
Bra024904
AT2G01120 (E=3e-117) ORC4, ATORC4 | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding ; Component of the origin recognition complex (ORC) that binds origins of replication (427 aa)
     
  0.989
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
     
  0.987
Bra022027
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (776 aa)
     
  0.987
Bra016292
AT1G26840 (E=2e-138) ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding (284 aa)
     
  0.986
Bra014341
AT2G01120 (E=2e-051) ORC4, ATORC4 | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding (197 aa)
     
  0.986
Bra040301
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (931 aa)
     
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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